I can not find the difference in the scanner preferences.
Which parameter is different?
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The only difference of the very deep scan configs is that these have the scanner preference optimize_test set to no.
In addition if there is a ultimate included in the scan config name the preference safe_checks is set to no.
A more generic documentation on the differences between the pre-defined scan configurations can be found here:
https://docs.greenbone.net/GSM-Manual/gos-4/en/vulnerabilitymanagement.html#creating-a-target
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